Nanopore sequencing enables highly accurate genotyping and identification of resistance determinants in key nosocomial pathogens
Hugh Cottingham, Louise M. Judd, Taylor Harshegyi-Hand, Jessica A. Wisniewski, Luke V. Blakeway, Tiffany Hong, Matthew H. Parker, Anton Y. Peleg, Kathryn E. Holt, Jane Hawkey, Nenad Macesic
Microbial Genomics (2026) — View publication
Targeted sequencing of Enterobacterales bacteria using CRISPR-Cas9 enrichment and Oxford Nanopore Technologies
Hugh Cottingham, Louise M. Judd, Jessica A. Wisniewski, Ryan R. Wick, Thomas D. Stanton, Ben Vezina, Nenad Macesic, Anton Y. Peleg, Iruka N. Okeke, Kathryn E. Holt, Jane Hawkey
mSystems (2025) — View publication
ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting
Jane Hawkey, Kelly L. Wyres, Louise M. Judd, Taylor Harshegyi, Luke Blakeway, Ryan R. Wick, Adam W. J. Jenney, Kathryn E. Holt
Genome Medicine (2022) — View publication
Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei
Jane Hawkey, Kalani Paranagama, Kate S. Baker, Rebecca J. Bengtsson, François-Xavier Weill, Nicholas R. Thomson, Stephen Baker, Louise Cerdeira, Zamin Iqbal, Martin Hunt, Danielle J. Ingle, Timothy J. Dallman, Claire Jenkins, Deborah A. Williamson, Kathryn E. Holt
Nature Communications (2021) — View publication
Impact of insertion sequences on convergent evolution of Shigella species
Jane Hawkey, Jonathan M. Monk, Helen Billman-Jacobe, Bernhard Palsson, Kathryn E. Holt
PLoS Genetics (2020) — View publication